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1

Integrative analysis of methylomic and transcriptomic data in fetal sheep muscle tissues in response to maternal diet during pregnancy

Namous, Hadjer, Peñagaricano, Francisco, Del Corvo, Marcello, Capra, Emanuele, Thomas, David L., Stella, Alessandra, Williams, John L., Marsan, Paolo Ajmone, Khatib, Hasan

Journal:

Year:

2018

Language:

english

File:

PDF, 856 KB

english, 2018

2

Genomic merit for reproductive traits. II: Physiological responses of Holstein heifers

Veronese, Anderson, Marques, Odinei, Peñagaricano, Francisco, Bisinotto, Rafael S., Pohler, Ky G., Bilby, Todd R., Chebel, Ricardo C.

Journal:

Journal of Dairy Science

Year:

2019

Language:

english

File:

PDF, 840 KB

english, 2019

3

Whole-genome scan reveals significant non-additive effects for sire conception rate in Holstein cattle

Nicolini, Paula, Amorín, Rocío, Han, Yi, Peñagaricano, Francisco

Journal:

Year:

2018

Language:

english

File:

PDF, 1.02 MB

english, 2018

4

MeSH-Informed Enrichment Analysis and MeSH-Guided Semantic Similarity Among Functional Terms and Gene Products in Chicken

Morota, Gota, Beissinger, Timothy M., Peñagaricano, Francisco

Journal:

G3 Genes|Genome|Genetics

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

5

Predicting male fertility in dairy cattle using markers with large effect and functional annotation data

Nani, Juan Pablo, Rezende, Fernanda M., Peñagaricano, Francisco

Journal:

Year:

2019

Language:

english

File:

PDF, 1.29 MB

english, 2019

6

Inferring Quantitative Trait Pathways Associated with Bull Fertility from a Genome-Wide Association Study

Peñagaricano, Francisco, Weigel, Kent A., Rosa, Guilherme J. M., Khatib, Hasan

Journal:

Frontiers in Genetics

Year:

2013

Language:

english

File:

PDF, 512 KB

english, 2013

7

Characterization and functional roles of paternal RNAs in 2–4 cell bovine embryos

Gross, Nicole, Strillacci, Maria Giuseppina, Peñagaricano, Francisco, Khatib, Hasan

Journal:

Scientific Reports

Year:

2019

File:

PDF, 1.29 MB

2019

8

Gene Mapping and Gene-Set Analysis for Milk Fever Incidence in Holstein Dairy Cattle

Pacheco, Hendyel A., da Silva, Simone, Sigdel, Anil, Mak, Chun Kuen, Galvão, Klibs N., Texeira, Rodrigo A., Dias, Laila T., Peñagaricano, Francisco

Journal:

Frontiers in Genetics

Year:

2018

Language:

english

File:

PDF, 958 KB

english, 2018

9

Gestational and lactational exposure to gossypol alters the testis transcriptome

Louvandini, Helder, Corrêa, Patricia S., Amorín, Rocío, Liu, Lihe, Ieda, Egon H., Jimenez, Carolina R., Tsai, Siu M., McManus, Concepta M., Peñagaricano, Francisco

Journal:

Year:

2020

Language:

english

File:

PDF, 1.77 MB

english, 2020

10

Maternal Diet during Pregnancy Induces Gene Expression and DNA Methylation Changes in Fetal Tissues in Sheep

Lan, Xianyong, Cretney, Evan C., Kropp, Jenna, Khateeb, Karam, Berg, Mary A., Peñagaricano, Francisco, Magness, Ronald, Radunz, Amy E., Khatib, Hasan

Journal:

Frontiers in Genetics

Year:

2013

Language:

english

File:

PDF, 1.28 MB

english, 2013

11

RNA-Seq reveals novel genes and pathways involved in bovine mammary involution during the dry period and under environmental heat stress

Dado-Senn, Bethany, Skibiel, Amy L., Fabris, Thiago F., Zhang, Y., Dahl, Geoffrey E., Peñagaricano, Francisco, Laporta, Jimena

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 2.57 MB

english, 2018

12

Unravelling the genomic architecture of bull fertility in Holstein cattle

Han, Yi, Peñagaricano, Francisco

Journal:

Year:

2016

Language:

english

File:

PDF, 1.50 MB

english, 2016

13

Knockdown of CDKN1C (p57kip2) and PHLDA2 Results in Developmental Changes in Bovine Pre-implantation Embryos

Driver, Ashley M., Huang, Wen, Kropp, Jenna, Peñagaricano, Francisco, Khatib, Hasan, Wrenzycki, Christine

Journal:

Year:

2013

Language:

english

File:

PDF, 788 KB

english, 2013

14

Association of lipid-related genes implicated in conceptus elongation with female fertility traits in dairy cattle

Abdollahi-Arpanahi, Rostam, Carvalho, Murilo R., Ribeiro, Eduardo S., Peñagaricano, Francisco

Journal:

Journal of Dairy Science

Year:

2019

Language:

english

File:

PDF, 1.75 MB

english, 2019

15

Mechanisms for rescue of CL during pregnancy: Gene expression in bovine CL following intrauterine pulses of Prostaglandins E1 and F2α.

Ochoa, Julian C, Peñagaricano, Francisco, Baez, Giovanni M, Melo, Leonardo F, Motta, Jessica C, Guerra, Alvaro Garcia, Meidan, Rina, Ferreira, João C Pinheiro, Sartori, Roberto, Wiltbank, Milo C

Journal:

Biology of Reproduction

Year:

2017

Language:

english

File:

PDF, 943 KB

english, 2017

16

RNA-Seq analysis uncovers transcriptomic variations between morphologically similar in vivo- and in vitro-derived bovine blastocysts

Driver, Ashley M, Peñagaricano, Francisco, Huang, Wen, Ahmad, Khawaja R, Hackbart, Katie S, Wiltbank, Milo C, Khatib, Hasan

Journal:

Year:

2012

Language:

english

File:

PDF, 410 KB

english, 2012

17

Association of milk protein genes with fertilization rate and early embryonic development in Holstein dairy cattle

Peñagaricano, Francisco, Khatib, Hasan

Journal:

Journal Dairy Research

Year:

2012

Language:

english

File:

PDF, 128 KB

english, 2012

18

Whole Genome Mapping Reveals Novel Genes and Pathways Involved in Milk Production Under Heat Stress in US Holstein Cows

Sigdel, Anil, Abdollahi-Arpanahi, Rostam, Aguilar, Ignacio, Peñagaricano, Francisco

Journal:

Frontiers in Genetics

Year:

2019

File:

PDF, 2.16 MB

2019

19

Gene expression analysis identifies new candidate genes associated with the development of black skin spots in Corriedale sheep

Francisco Peñagaricano, Pilar Zorrilla, Hugo Naya, Carlos Robello, Jorge I. Urioste

Journal:

Journal of Applied Genetics

Year:

2012

Language:

english

File:

PDF, 166 KB

english, 2012

20

Comparison of transcriptomic landscapes of different lamb muscles using RNA-Seq.

Armstrong, Eileen, Iriarte, Andres, Nicolini, Paula, De Los Santos, Jorge, Ithurralde, Javier, Bielli, Alejandro, Bianchi, Gianni, Peñagaricano, Francisco, Óvilo, Cristina

Journal:

Year:

2018

Language:

english

File:

PDF, 2.98 MB

english, 2018

21

Characterization and functional roles of paternal RNAs in 2–4 cell bovine embryos

Gross, Nicole, Strillacci, Maria Giuseppina, Peñagaricano, Francisco, Khatib, Hasan

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 1.29 MB

english, 2019

22

Genomic merit for reproductive traits. I: Estrous characteristics and fertility in Holstein heifers

Veronese, Anderson, Marques, Odinei, Moreira, Rafael, Belli, Anna L., Bisinotto, Rafael S., Bilby, Todd R., Peñagaricano, Francisco, Chebel, Ricardo C.

Journal:

Journal of Dairy Science

Year:

2019

File:

PDF, 883 KB

2019

23

Whole Genome Mapping Reveals Novel Genes and Pathways Involved in Milk Production Under Heat Stress in US Holstein Cows

Sigdel, Anil, Abdollahi-Arpanahi, Rostam, Aguilar, Ignacio, Peñagaricano, Francisco

Journal:

Frontiers in Genetics

Year:

2019

Language:

english

File:

PDF, 2.16 MB

english, 2019

24

Maternal nutrition induces gene expression changes in fetal muscle and adipose tissues in sheep

Peñagaricano, Francisco, Wang, Xin, Rosa, Guilherme JM, Radunz, Amy E, Khatib, Hasan

Journal:

Year:

2014

Language:

english

File:

PDF, 1.07 MB

english, 2014

25

Exploring causal networks underlying fat deposition and muscularity in pigs through the integration of phenotypic, genotypic and transcriptomic data

Peñagaricano, Francisco, Valente, Bruno D., Steibel, Juan P., Bates, Ronald O., Ernst, Catherine W., Khatib, Hasan, Rosa, Guilherme JM

Journal:

BMC Systems Biology

Year:

2015

Language:

english

File:

PDF, 1.64 MB

english, 2015

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